SIMR Bats

As a part of our ongoing research, we dowloaded 50 sequenced and assembled bat genomes and generated gene models. The source of the genomes can be found in the supplemental material in Camacho., et al, 2024. The genomes and gene models can be found in our genome browsers, one for each species in our studies. These genome browsers provides an intuitive interface for screening gene candidates and exploring both coding and non-coding genomic regions. It facilitates advanced annotation with functional genomics data, deepening our understanding of how genetic variations influence phenotypic traits. Currently featuring 50 bat genomes, this resource complements the ongoing efforts of the Bat1K project (bat1k.com), which aims to sequence additional genomes. Our browser offers a unique visual tool for detailed exploration and analysis of the existing genome datasets. This parallel effort enables detailed and accessible exploration of bat genomic data to advance our knowledge of genotype-phenotype relationships.




The table below contains links to each of the 50 bat genome browsers and the gene models we generated.


SIMR SYM Chiroptera Family Genus species Common Name Genome Browser SIMR Generated Data
ACA1 Phyllostomidae Anoura caudifer Tailed tailless bat ACA1 Nucleotide | Protein | GFF
ACI1 Vespertilionidae Aeorestes cinereus Hoary bat ACI1 Nucleotide | Protein | GFF
AJA1 Phyllostomidae Artibeus jamaicensis Jamaican fruit-eating bat AJA1 Nucleotide | Protein | GFF
APA1 Vespertilionidae Antrozous pallidus Pallid bat APA1 Nucleotide | Protein | GFF
CBR1 Pteropodidae Cynopterus brachyotis Lesser short-nosed fruit bat CBR1 Nucleotide | Protein | GFF
CPE1 Phyllostomidae Carollia perspicillata Seba's short-tailed bat CPE1 Nucleotide | Protein | GFF
CTH1 Rhinolophidae Craseonycteris thonglongyai Kitti's hog-nosed bat CTH1 Nucleotide | Protein | GFF
DRO1 Phyllostomidae Desmodus rotundus Common vampire bat DRO1 Nucleotide | Protein | GFF
EDU1 Pteropodidae Eidolon dupreanum African Straw-Colored Fruit Bat EDU1 Nucleotide | Protein | GFF
EFU1 Vespertilionidae Eptesicus fuscus Big brown bat EFU1 Nucleotide | Protein | GFF
EHE1 Pteropodidae Eidolon helvum Straw-coloured fruit bat EHE1 Nucleotide | Protein | GFF
ESP1 Pteropodidae Eonycteris spelaea Cave nectar bat ESP1 Nucleotide | Protein | GFF
HAR1 Hipposideridae Hipposideros armiger Great roundleaf bat HAR1 Nucleotide | Protein | GFF
HGA1 Hipposideridae Hipposideros galeritus Cantor's roundleaf bat HGA1 Nucleotide | Protein | GFF
LBO1 Vespertilionidae Lasiurus borealis Eastern red bat LBO1 Nucleotide | Protein | GFF
LNI1 Phyllostomidae Leptonycteris nivalis Mexican Long-nosed Bat LNI1 Nucleotide | Protein | GFF
LYE1 Phyllostomidae Leptonycteris yerbabuenae Lesser long-nosed bat LYE1 Nucleotide | Protein | GFF
MAU1 Vespertilionidae Murina aurata feae Little tube-nosed bat MAU1 Nucleotide | Protein | GFF
MBL1 Mormoopidae Mormoops blainvillei Antillean ghost-faced bat MBL1 Nucleotide | Protein | GFF
MBR1 Vespertilionidae Myotis brandtii Brandt's bat MBR1 Nucleotide | Protein | GFF
MCA1 Phyllostomidae Macrotus californicus California big-eared bat MCA1 Nucleotide | Protein | GFF
MDA1 Vespertilionidae Myotis davidii David's myotis MDA1 Nucleotide | Protein | GFF
MHA1 Phyllostomidae Musonycteris harrisonii Banana bat MHA1 Nucleotide | Protein | GFF
MHI1 Phyllostomidae Micronycteris hirsuta Hairy big-eared bat MHI1 Nucleotide | Protein | GFF
MLU1 Vespertilionidae Myotis lucifugus Little brown bat MLU1 Nucleotide | Protein | GFF
MLY1 Megadermatidae Megaderma lyra Greater false vampire bat MLY1 Nucleotide | Protein | GFF
MMO1 Molossidae Molossus molossus Pallas's mastiff bat MMO1 Nucleotide | Protein | GFF
MMY1 Vespertilionidae Myotis myotis Greater mouse-eared bat MMY1 Nucleotide | Protein | GFF
MNA1 Miniopteridae Miniopterus natalensis Natal long-fingered bat MNA1 Nucleotide | Protein | GFF
MSC1 Miniopteridae Miniopterus schreibersii Common bent-wing bat MSC1 Nucleotide | Protein | GFF
MSE1 Vespertilionidae Myotis septentrionalis Northern long-eared bat MSE1 Nucleotide | Protein | GFF
MSO1 Pteropodidae Macroglossus sobrinus Long-tongued fruit bat MSO1 Nucleotide | Protein | GFF
MWA1 Phyllostomidae Macrotus waterhousii Waterhouse's leaf-nosed bat MWA1 Nucleotide | Protein | GFF
NHU1 Vespertilionidae Nycticeius humeralis Evening bat NHU1 Nucleotide | Protein | GFF
NLE1 Noctilionidae Noctilio leporinus Greater bulldog bat NLE1 Nucleotide | Protein | GFF
PAL1 Pteropodidae Pteropus alecto Black flying fox PAL1 Nucleotide | Protein | GFF
PDI1 Phyllostomidae Phyllostomus discolor Pale spear-nosed bat PDI1 Nucleotide | Protein | GFF
PGI1 Pteropodidae Pteropus giganteus Indian flying fox PGI1 Nucleotide | Protein | GFF
PHA1 Phyllostomidae Phyllostomus hastatus Greater spear-nosed bat PHA1 Nucleotide | Protein | GFF
PKU1 Vespertilionidae Pipistrellus kuhlii Kuhl's pipistrelle PKU1 Nucleotide | Protein | GFF
PPA1 Mormoopidae Pteronotus parnellii Parnell's mustached bat PPA1 Nucleotide | Protein | GFF
PPI1 Vespertilionidae Pipistrellus pipistrellus Common pipistrelle PPI1 Nucleotide | Protein | GFF
PRU1 Pteropodidae Pteropus rufus Madagascan flying fox PRU1 Nucleotide | Protein | GFF
PVA1 Pteropodidae Pteropus vampyrus Large flying fox PVA1 Nucleotide | Protein | GFF
RAE1 Pteropodidae Rousettus aegyptiacus Egyptian fruit bat RAE1 Nucleotide | Protein | GFF
RFE1 Rhinolophidae Rhinolophus ferrumequinum Greater horseshoe bat RFE1 Nucleotide | Protein | GFF
RMA1 Pteropodidae Rousettus madagascariensis Madagascan rousette RMA1 Nucleotide | Protein | GFF
SHO1 Phyllostomidae Sturnira hondurensis Honduran yellow-shouldered bat SHO1 Nucleotide | Protein | GFF
TBR1 Molossidae Tadarida brasiliensis Brazilian free-tailed bat TBR1 Nucleotide | Protein | GFF
TSA1 Phyllostomidae Tonatia saurophila Stripe-headed round-eared bat TSA1 Nucleotide | Protein | GFF